Bibliography

[1]1998. Architecture et modélisation en arboriculture fruitière, Actes du 11ème colloque sur les recherches fruitières. INRA-Ctifl, Montpellier, France.
[2]Barthélémy, D., 1991. Levels of organization and repetition phenomena in seed plants. Acta Biotheoretica, 39: 309-323.
[3]Bouchon, J., de Reffye, P. et Barthélémy, D. (Eds), 1997. Modélisation et simulation de l’architecture des végétaux. Science Update. INRA Editions, Paris, France, 435 pp.
[4]Caraglio, Y. et Dabadie, P., 1989. Le peuplier. Quelques aspects de son architecture. In: ” Architecture, structure, mécanique de l’arbre ” Premier séminaire interne, Montpellier (FRA) 01/89, pp. 94-107.
[5]Cilas, C., Guédon, Y., Montagnon, C. et de Reffye, P., 1998. Analyse du suivi de croissance d’un cultivar de caférier (Coffea canephora Pierre) en Côte d’Ivoire. In: Architecture et modélisation en arboriculture fruitière, 11ème colloque sur les recherches fruitières, Montpellier, France 5-6/03/1998, INRA-Ctifl, pp. 45-55.
[6]Costes, E. et Guedon, Y., 1997. Modelling the sylleptic branching on one-year-old trunks of apple cultivars. Journal of the American Society for Horticultural Science, 122(1): 53-62.
[7]Costes, E., Sinoquet, H., Godin, C. et Kelner, J.J., 1999. 3D digitizing based on tree topology : application to study th variability of apple quality within the canopy. Acta Horticulturae, in press.
[8]de Reffye, P., 1982. Modèle Mathématique aléatoire et simulation de la croissance et de l’architecture du caféier Robusta. 3ème Partie. Etude de la ramification sylleptique des rameaux primaires et de la ramification proleptique des rameaux secondaires. Café Cacao Thé, 26(2): 77-96.
[9]de Reffye, P., Dinouard, P. et Barthélémy, D., 1991. Modélisation et simulation de l’architecture de l’Orme du Japon Zelkova serrata (Thunb.) Makino (Ulmaceae): la notion d’axe de référence. In: 2ème Colloque International sur l’Arbre, Montpellier (FRA) 9-14/09/90. Naturalia Monspeliensa, Vol. hors-série, pp. 251-266.
[10]de Reffye, P., Edelin, C., Françon, J., Jaeger, M. et Puech, C., 1988. Plant models faithful to botanical structure and development. In: SIGGRAPH‘88, Atlanta (USA) 1-15/08/88. C.G.S.C. Proceedings, Vol. 22, pp. 151-158.
[11]de Reffye, P. et al., 1995. A model simulating above- and below- ground tree architecture with agroforestry applications. In: Agroforestry : Science; Policy and Practice, 20th IUFRO World Congress, F.L. Sinclair (Ed.), Tampere, Finlande 06-12/08/1995. Agroforestry Systems, Vol. 30, pp. 175-197.
[12]Dempster, A.P., Laird, N.M. et Rubin, D.B., 1977. Maximum likelihood from incomplete data via the EM algorithm (with discussion). Journal of the Royal Statistical Society, Series B, 39: 1-38.
[13]Ferraro, P. et Godin, C., 1998. Un algorithme de comparaison d’arborescences non ordonnées appliqué à la comparaison de la structure topologique des plantes. In: SFC‘98, Recueil des Actes, Montpellier, France 21-23/09/1998, Agro Monpellier, pp. 77-81.
[14]Ferraro, P. et Godin, C., 1999. A distance measure between plant architectures. Annales des Sciences Forestières: accepté.
[15]Fisher, J.B. et Weeks, C.L., 1985. Tree architecture of Neea (Nyctaginaceae) : geometry and simulation of branches and the presence of two different models. Bulletin du Muséum National d’Histoire Naturelle, section B Adansonia, 7(4): 385-401.
[16]Fitter, A.H., 1987. An architectural approach to the comparative ecology of plant root systems. New Phytologist, 106(Suppl.): 61-77.
[17]Fournier, D., Guédon, Y. et Costes, E., 1998. A comparison of different fruiting shoots of peach trees. In: IVth International Peach Symposium, Bordeaux, France , Vol. 465(2), pp. 557-565.
[18]Frijters, D. et Lindenmayer, A., 1976. Developmental descriptions of branching patterns with paraclidial relationships. In: Formal Languages, Automata and Development, G. Rozenberg et A. Lindenmayer (Eds), Noordwijkerhout, The Netherlands , North-Holland Publishing Company, pp. 57-73.
[19]Godin, C., Bellouti, S. et Costes, E., 1996. Restitution virtuelle de plantes réelles : un nouvel outil pour l’aide à l’analyse de données botaniques et agronomiques. In: L’interface des mondes réels et virtuels, 5èmes Journées Internationales Informatiques, Montpellier, France 22-24/05/96, pp. 369-378.
[20]Godin, C. et Caraglio, Y., 1998. A multiscale model of plant topological structures. Journal of Theoretical Biology, 191: 1-46.
[21]Godin, C. et Costes, E., 1996. How to get representations of real plants in computers for exploring their botanical organisation. In: International Symposium on Modelling in Fruit Trees and Orchard Management, Avignon (FRA) 4-8/09/95, ISHS. Acta Horticulturae, Vol. 416, pp. 45-52.
[22]Godin, C., Costes, E. et Caraglio, Y., 1997. Exploring plant topology structure with the AMAPmod software : an outline. Silva Fennica, 31(3): 355-366.
[23]Godin, C., Costes, E. et Sinoquet, H., 1999. A method for describing plant architecture which integrates topology and geometry. Annals of Botany, 84(3): 343-357.
[24]Godin, C., Guédon, Y. et Costes, E., 1999. Exploration of plant architecture databases with the AMAPmod software illustrated on an apple-tree bybird family. Agronomie, 19(3/4): 163-184.
[25]Godin, C., Guédon, Y., Costes, E. et Caraglio, Y., 1997. Measuring and analyzing plants with the AMAPmod software. In: Plants to ecosystems - Advances in Computational Life Sciences 2nd International Symposium on Computer Challenges in Life Science. M.T. Michalewicz (Ed.). CISRO Australia, Melbourne, Australie, pp. 53-84.
[26]Guédon, Y., 1998. Analyzing nonstationary discrete sequences using hidden semi- Markov chains. Document de travail du programme Modélisation des plantes, 5-98. CIRAD, Montpellier, France, 41 pp.
[27]Guédon, Y., 1998. Hidden semi-Markov chains: a new tool for analyzing nonstationary discrete sequences. In: 2nd International Symposium on Semi-Markov models: theory and applications, J. Janssen et N. Limnios (Eds), Compiègne, France 09-11/12/1998, Université de Technologie de Compiègne, pp. 1-7.
[28]Guédon, Y., Barthélémy, D. et Caraglio, Y., 1999. Analyzing spatial structures in forests tree architectures. In: Salamandra (Ed) Empirical and process-based models for forest tree and stand growth simulation, Oeiras, Portugal 21-27/09/1997, pp. 23-42.
[29]Guédon, Y. et Costes, E., 1999. A statistical approach for analyszing sequences in fruit tree architecture. In: Wagenmakers P.S., van der Werf W., Blaise Ph. (Eds), 5th International Symposium on Computer modelling in fruit research and orchard management, Wageningen, The Netherlands 28-31/07/1998. Acta Horticulturae, pp. 271-280.
[30]Hallé, F. et Oldeman, R.A.A., 1970. Essai sur l’architecture et la dynamique de croissance des arbres tropicaux. Monographie de Botanique et de Biologie Végétale, Vol. 6. Masson, Paris, 176 pp.
[31]Hallé, F., Oldeman, R.A.A. et Tomlinson, P.B., 1978. Tropical trees and forests. An architectural analysis. Springer-Verlag, New-York.
[32]Hanan, J. et Room, P., 1997. Practical aspects of plant research. In: Plants to ecosystems - Advances in Computational Life Sciences 2nd International Symposium on Computer Challenges in Life Science. M.T. Michalewicz (Ed.). CISRO Australia, Melbourne, Australie, pp. 28-43.
[33]Harper, J.L., Rosen, B.R. et White, J., 1986. The growth and form of modular organisms. The Royal Society, London.
[34]Honda, H., 1971. Description of the form of trees by the parameters of the tree-like body : Effects of the branching angle and the branch length on the shape of the tree-like body. Journal of Theoretical Biology, 31: 331-338.
[35]Honda, H., Tommlinson, P. et Fisher, J.B., 1982. Two geometrical models of branching of tropical trees. Annals of Botany, 49: 1-12.
[36]Jackson, J.E. et Palmer, J.W., 1981. Light distribution in discontinuous canopies: calculation of leaf areas and canopy volumes above defined irradiance contours for use in productivity modelling. Annals of Botany, 47: 561-565.
[37]Jaeger, M. et de Reffye, P., 1992. Basic concepts of computer simulation of plant growth. In: The 1990 Mahabaleshwar Seminar on Modern Biology, Mahabaleshwar (IND) . Journal of Biosciences, Vol. 17, pp. 275-291.
[38]Mitchell, K.J., 1975. Dynamics and simulated yield of Douglas-fir. Forest Science, 21(4): 1-39.
[39]Prusinkiewicz, P. et Lindenmayer, A., 1990. The algorithmic beauty of plants. Springer Verlag.
[40]Prusinkiewicz, P.W., Remphrey, W.R., Davidson, C.G. et Hammel, M.S., 1994. Modeling the architecture of expanding Fraxinus pennsylvanica shoots unsing L-systems. Canadian Journal of Botany, 72: 701-714.
[41]Rapidel, B., 1995. Etude expérimentale et simulation des transferts hydriques dans les plantes individuelles. Application au caféier (Coffea arabica L.). Thèse Doctorat, Université des Sciences et Techniques du Languedoc (USTL), Montpellier, France, 246 pp.
[42]Remphrey, W.R., Neal, B.R. et Steeves, T.A., 1983. The morphology and growth of Arctostaphylos uva-ursi (bearberry): an architectural model simulated colonizing growth. Canadian Journal of Botany, 61: 2451-2458.
[43]Room, P. et Hanan, J., 1996. Virtual plants: new perspectives for ecologists, pathologists and agricultural scientists. Trends in Plant Science Update, 1(1): 33-38.
[44]Ross, J.K., 1981. The radiation regim and the architecture of plant stands. Junk W. Pubs., The Hague, The Netherlands.
[45]Sabatier, S., Ducousso, I., Guédon, Y., Barthélémy, D. et Germain, E., 1998. Structure de scions d’un an de Noyer commun, Juglans regia L., variété Lara greffés sur trois porte-greffe (Juglans nigra, J. regia, J. nigra x J. regia). In: Architecture et modélisation en arboriculture fruitière, 11ème colloque sur les recherches fruitières, Montpellier, France 5-6/03/1998, INRA-Ctifl, pp. 75-84.
[46]Sinoquet, H., Adam, B., Rivet, P. et Godin, C., 1998. Interactions between light and plant architecture in an agroforestry walnut tree. Agroforestry Forum, 8(2): 37-40.
[47]Sinoquet, H., Godin, C. et Costes, E., 1998. Mesure de l’architecture par digitalisation 3D. In: Numérisation 3D, Design et digitalisation, Création industrielle et artistique, Actes du Congrès, Paris, France 27-28/05/1998.
[48]Sinoquet, H., Rivet, P. et Godin, C., 1997. Assessment of the three-dimensional architecture of walnut trees using digitising. Silva Fennica, 31(3): 265-273.
[49]Sinoquet, H., Thanisawanyangkura, S., Mabrouk, H. et Kasemsap, P., 1998. Characterisation of the light environment in canopies using 3D digitising and image processing. Annals of Botany, 82: 203-212.
[50]Zhang, K., 1993. A new editing based distance between unordered labeled trees. In: Combinatorial Pattern Matching CPM 93, 4th Annual Symposium, Padova, Italie 2-4/06/1993.